miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|146177435|gb|ES426441.1|ES426441 CATTTGAATTTCAAGAACATAACATTATTCATCCTTGCAACAAAAGATCAAACGAGAGTATAAATAGAGATACAAGGCAA
TAATTTTCAAAGACGGTTCTAGAACAATGCAGCAACTTATCAACTTCAATCAGAAAATGATGTTAAATGCAACTTCATCA
TTTACATATCCTGGAAGAACATATTATGGGGCATACCTAAGAGTTTTGAATTGAAGTACATCTCATTTTCGGATCCCCTT
TAAAGACAAAACACAACTGTTGATATAGTACAATTGAACTATAATCAGTACTCTAGTGATCCAGTCGATGGGAGAACTGA
ATTAATGTTGCGAGTAGAATTTCTAGCTACACAGTCCTCTGGACTACTGCTTGTCTACTGCTGTGTAGGAATGGAACTCC
ACAACTCCATATCATCCTGACTCATCTGCGGGACTTCTGGAGGAGACAGTATCTTAATAAACCGAACATTATTGACAAAC
TCCTCCCAAGGATCATCCCCAAGAAGAAGAACATCCTTCTCCTTGTCAACAAATACAAGCTGCCAGCCTGATCTTGGGTC
CTCCAACTGGCCTTCTAGACCAAAACATACGGTCAAGCTCGGGCACGCAGCTCTGGAT




Most similar to sp|Q6H6V4|ARFF_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp.
            japonica GN=ARF6 PE=1 SV=1
          Length = 908

 Score =  102 bits (254), Expect = 2e-21
 Identities = 53/100 (53%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
 Frame = -2

Query: 584  FGLEGQLEDP-RSGWQLVFVDKEKDVLLLGDDPWEEFVNNVRFIKILSPPEVPQMSQDDM 408
            FGLEGQLEDP RSGWQLVFVD+E DVLL+GDDPW+EFVN+V  IKILSP EV QM +  +
Sbjct: 811  FGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGI 870

Query: 407  ELWXXXXXXXXXXXXPEDCVARNSTRNINSVLPSTGSLEY 288
            EL+             ++ ++R  +R++++ + S GS+E+
Sbjct: 871  ELF--STSARRLGNSCDNYMSRQESRSLSTGIASVGSVEF 908